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Scientific publications

NCGR has published papers in some of the most prestigious scientific journals. You can access a full list of all our publications and some co-author publications through the links below of this page. The impact factor is referring to 2010 JCR Science Edition.

  • Our publications
  • Co-author publications
2012:
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. 
Huang X, Zhao Y, Wei X, Li C, Wang A, Zhao Q, Li W, Guo Y, Deng L, Zhu C, Fan D, Lu Y, Weng Q, Liu K, Zhou T, Jing Y, Si L, Dong G, Huang T, Lu T, Feng Q, Qian Q, Li J, Han B. Nature Genet. 2012; 44: 32-39. [IF: 36.377]  PDF 
2011:
Genetic Control of a Transition from Black to Straw-white Seed Hull in Rice Domestication.
Zhu B, Si L, Wang Z, Zhou Y, Zhu J, Shangguan Y, Lv D, Fan D, Li C, Lin H, Qian Q, Sang T, Zhou B, Minobe Y, Han B. Plant Physiol. 2011; 155: 1301-1311. [IF: 6.451] PMID:21263038   PDF
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombination inbred lines.
Wang L, Wang A, Huang X, Zhao Q, Dong G, Qian Q, Sang T, Han B.
Theor Appl Genet. 2011; 122: 327-340. [IF: 3.264]
PMID: 20878143   PDF 
2010:
Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).
Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G.
BMC Genomics 2010; 11: 656. [IF: 4.206]
PMID: 21106060  PDF
Genome-wide association studies of 14 agronomic traits in rice landraces.
Huang X, Wei X, Sang T, Zhao Q, Feng Q, Zhao Y, Li C, Zhu C, Lu T, Zhang Z, Li M, Fan D, Guo Y, Wang A, Wang L, Deng L, Li W, Lu Y, Weng Q, Liu K, Huang T, Zhou T, Jing Y, Li W, Lin Z, Buckler ES, Qian Q, Zhang Q, Li J, Han B.
Nature Genet. 2010; 42: 961-967. [IF: 36.377]
PMID: 20972439  PDF  Remarks from Nature Genet. from Nature Rev. Genet. from NatureChina 
SEG-Map: A novel software for genotype calling and genetic map construction from next-generation sequencing.
Zhao Q, Huang X, Lin Z, Han B.
Rice 2010; 3: 98-102. [IF: 2.900]
PDF
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq.
Lu T, Lu G, Fan D, Zhu C, Li W, Zhao Q, Feng Q, Zhao Y, Guo Y, Li W, Huang X, Han B.
Genome Res. 2010; 20: 1238-49. [IF: 13.588]
PMID: 20627892  PDF PDF_corrected
Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences.
Peng Z, Lu T, Li L, Liu X, Gao Z, Hu T, Yang X, Feng Q, Guan J, Weng Q, Fan D, Zhu C, Lu Y, Han B, Jiang Z.
BMC Plant Biol. 2010; 10: 116. [IF: 4.085]
PMID: 0565830   PDF
2009:
Dwarf 88, a novel putative esterase gene affecting architecture of rice plant.
Gao Z, Qian Q, Liu X, Yan M, Feng Q, Dong G, Liu J, Han B.
Plant Mol Biol. 2009; 71: 265-76. [IF: 4.149]
PMID: 19603144   PDF
High-throughput genotyping by whole-genome resequencing.
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, Dong G, Sang T, Han B.
Genome Res. 2009; 19: 1068-76. [IF: 13.588]
PMID: 19420380   PDF
The Magnaporthe oryzae avirulence gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t.
Li W, Wang B, Wu J, Lu G, Hu Y, Zhang X, Zhang Z, Zhao Q, Feng Q, Zhang H, Wang Z, Wang G, Han B, Wang Z, Zhou B.
Mol Plant Microbe Interact. 2009; 22: 411-20. [IF: 4.010]
PMID: 19271956   PDF
Evolutionary conservation of neighbouring gene pairs in plants.
Liu X, Han B.
Gene. 2009; 437: 71-9. [IF: 2.266]
PMID: 19264115   PDF
Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.
Zheng X, Chen B, Lu G, Han B.
Biochem Biophys Res Commun. 2009; 379: 985-9. [IF: 2.595]
PMID: 19135985   PDF
Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa).
Gao C, Han B.
Gene. 2009; 431: 86-94. [IF: 2.266]
PMID: 19071198    PDF
Analysis of collinear regions of Oryza AA and CC genomes.
Feng Q, Huang T, Zhao Q, Zhu J, Lin Z, Han B.
J Genet Genomics. 2009; 36: 667-77. [IF: 1.494]
PMID: 19932463   PDF
Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice.
Lu G, Gao C, Zheng X, Han B.
Planta 2009; 229: 605-15. [IF: 3.098]
PMID: 19048288   PDF
Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice.
Hu W, Hu G, Han B.
Plant Sci. 2009; 176: 583-90. [IF: 2.481]
PDF
2008:
RICD: a rice indica cDNA database resource for rice functional genomics.
Lu T, Huang X, Zhu C, Huang T, Zhao Q, Xie K, Xiong L, Zhang Q, Han B.
BMC Plant Biol. 2008; 8: 118. [IF: 4.085]
PMID: 19036133    PDF
Rice genome research: current status and future perspectives.
Han B, Zhang Q.
Plant Genome 2008; 1: 71-6.
PDF
Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943.
Lu T, Yu S, Fan D, Mu J, Shangguan Y, Wang Z, Minobe Y, Lin Z, Han B.
DNA Res. 2008; 15: 285-95. [IF: 4.754]
PMID: 18687674   PDF
Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice.
Huang X, Lu G, Zhao Q, Liu X, Han B.
Plant Physiol. 2008; 148: 25-40. [IF: 6.451]
PMID: 18650402   PDF
2007:
A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies.
Liu X, Lu T, Yu S, Li Y, Huang Y, Huang T, Zhang L, Zhu J, Zhao Q, Fan D, Mu J, Shangguan Y, Feng Q, Guan J, Ying K, Zhang Y, Lin Z, Sun Z, Qian Q, Lu Y, Han B.
Plant Mol Biol. 2007; 65: 403-15. [IF: 4.149]
PMID: 17522955  PDF
Rice functional genomics research in China.
Han B, Xue Y, Li J, Deng XW, Zhang Q.
Philos Trans R Soc Lond B Biol Sci. 2007; 362: 1009-21. [IF: 6.053]
PMID: 17347106   PDF
Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
Wang D, Pei K, Fu Y, Sun Z, Li S, Liu H, Tang K, Han B, Tao Y.
Gene. 2007; 394: 13-24. [IF: 2.266]
PMID: 17408882   PDF
2006:
Differentiation of a Miniature Inverted Transposable Element (MITE) System in Asian Rice Cultivars and Its Inference for a Diphyletic Origin of Two Subspecies of Asian Cultivated Rice.
Hu H, Mu J, Zhang H, Tao YZ, Han B.
J Integr Plant Biol. 2006; 48: 260-267. [IF: 1.603]
PDF
Sequence analysis of mRNA polyadenylation signals of rice genes. (Peer Review in English)
Lu Y, Gao C, Han B.
Chinese Sci Bull. 2006; 51: 1069-1077. [IF: 1.087]
PDF
2005:
Anaerobic induction of isocitrate lyase and malate synthase in submerged rice seedlings indicates the important metabolic role of the glyoxylate cycle.
Lu Y, Wu Y, Han B.
Acta Biochim Biophys Sin (Shanghai). 2005; 37: 406-14. [IF: 1.547]
PMID: 15944756  PDF
A tiling microarray expression analysis of rice chromosome 4 suggests a chromosome-level regulation of transcription.
Jiao Y, Jia P, Wang X, Su N, Yu S, Zhang D, Ma L, Feng Q, Jin Z, Li L, Xue Y, Cheng Z, Zhao H, Han B, Deng X.
Plant Cell. 2005; 17: 1641-57. [IF: 9.396]
PMID: 15863518  PDF
Computational identification of 69 retroposons in Arabidopsis.
Zhang Y, Wu Y, Liu Y, Han B.
Plant Physiol. 2005; 138: 935-48. [IF: 6.451]
PMID: 15923328   PDF
2004:
Identification and analysis of a group of highly conserved trs-like genes in rice. [Article in Chinese]
Hu X, Hu H, Hong GF, Han B.
Yi Chuan Xue Bao. 2004; 31: 822-9. [IF: 0.813]
PMID: 15481538   PDF
Preparation of single rice chromosome for construction of a DNA library using a laser microbeam trap.
Liu X, Wang H, Li Y, Tang Y, Liu Y, Hu X, Jia P, Ying K, Feng Q, Guan J, Jin C, Zhang L, Lou L, Zhou Z, Han B.
J Biotechnol. 2004; 109: 217-26. [IF: 2.970]
PMID: 15066759   PDF
Structural features of the rice chromosome 4 centromere.
Zhang Y, Huang Y, Zhang L, Li Y, Lu T, Lu Y, Feng Q, Zhao Q, Cheng Z, Xue Y, Wing R, Han B.
Nucleic Acids Res. 2004; 32: 2023-30. [IF: 7.836]
PMID: 15064362   PDF
Sequence variations of simple sequence repeats on chromosome-4 in two subspecies of the Asian cultivated rice.
Li C, Zhang Y, Ying K, Liang X, Han B.
Theor Appl Genet. 2004; 108: 392-400. [IF: 3.246]
PMID: 14564393  PDF
The structural, transcriptional and homology analysis of two frr genes in rice. [Article in Chinese]
Hu X, Hu H, Hong G, Han B.
Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao. 2004; 30: 105-14.
PMID: 15583417   PDF
Identification and analysis of a group of highly conserved trs-like genes in rice. [Article in Chinese]
Hu X, Hu H, Hong G, Han B.
Yi Chuan Xue Bao. 2004; 31: 822-9. [IF: 0.813]
PMID: 15481538   PDF
Transcript abundance of rml1, encoding a putative GT1-like factor in rice, is up-regulated by Magnaporthe grisea and down-regulated by light.
Wang R, Hong G, Han B.
Gene. 2004; 324: 105-15. [IF: 2.266]
PMID: 14693376   PDF
2003:
Characterization of the copy number of RIRE10 retrotransposon and transcriptional activity of its LTR in rice genome. [Article in Chinese]
Wang R, Hong G, Han B.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2003; 35: 768-73.
PMID: 12897975  
Genome-wide intraspecific DNA-sequence variations in rice.
Han B, Xue Y.
Curr Opin Plant Biol. 2003; 6: 134-8. [IF: 9.431]
PMID: 12667869   PDF
2002:
Sequence and analysis of rice chromosome 4.
Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B.
Nature. 2002 ; 420: 316-20. [IF: 36.101]
PMID: 12447439   PDF
A fine physical map of the rice chromosome 4.
Zhao Q, Zhang Y, Cheng Z, Chen M, Wang S, Feng Q, Huang Y, Li Y, Tang Y, Zhou B, Chen Z, Yu S, Zhu J, Hu X, Mu J, Ying K, Hao P, Zhang L, Lu Y, Zhang LS, Liu Y, Yu Z, Fan D, Weng Q, Chen L, Lu T, Liu X, Jia P, Sun T, Wu Y, Zhang Y, Lu Y, Li C, Wang R, Lei H, Li T, Hu H, Wu M, Zhang R, Guan J, Zhu J, Fu G, Gu M, Hong G, Xue Y, Wing R, Jiang J, Han B.
Genome Res. 2002; 12: 817-23. [IF: 13.588]
PMID: 11997348   PDF
Characterization of a S-locus-related receptor-like kinase cluster on rice chromosome 4.
Lei H, Zhou B, Hong G, Han B.
Acta Botanica Sinica 2002; 44: 1346-1350.
PDF
Structural Analysis of a Gene Cluster Encoding DFR-like Proteins from Rice Chromosome 4.
Lei H, Zhou B, Zhang Y, Hong G, Han B.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 2002; 34: 685-689.
PDF
A high efficient approach used for BAC-contig extension of Oryza sativa with PCR screening the BAC clone pools.
Hu H, Li T, Mu J, Han B, Hong G.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 2002; 34: 358-364.
PDF
Colony PCR Apply to The Rice Genome Sequencing.
Tang Y, Li Y, Zhu J, Hu X, Lin Z, Han B, Hong G.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Jin Zhan 2001; 29: 316-318.
PDF
2001:
Structural Analysis of a Gene Cluster Encoding Two Cationic and Three Anionic Peroxidases from Rice Chromosome 4.
Chen Z, Zhou B, Han B, Qian Y, Hong G.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 2001; 33: 163-172.
PDF
Identification and Structural Analysis of a Class of Potentially Transposable Solo-LTR in Rice Genome.
Zhou B, Chen Z, Han B, Hong G.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 2001; 33: 158-162.
PDF
Protein phosphatase 2A: identification in Oryza sativa of the gene encoding the regulatory A subunit.
Yu S, Lei H, Chang W, Söll D, Hong G.
Plant Mol Biol. 2001; 45: 107-12. [IF: 4.149]
PMID: 11247601   PDF
Before 2001:
Preferential Location of MITEs in Rice Genome.
Zhang X, Hong G.
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 2000; 32: 223-228.
PDF
A 120 kilobase resolution contig map of the rice genome.
Hong G, Qian Y, Yu S, Hu X, Zhu J, Tao W, Li W, Su C, Zhao H, Qiu L, Yu D, Liu X, Wu B, Zhang X, Zhao W.
DNA Seq. 1997; 7: 319-35.
PMID: 9524812
A rapid and accurate strategy for rice contig map construction by combination of fingerprinting and hybridization.
Hong G.
Plant Mol Biol. 1997; 35: 129-33. [IF: 4.149]
PMID: 9291966   PDF
Construction of a full bacterial artificial chromosome(BAC) library of Oryza sativa genome.
Tao Q, Zhao H, Qiu L, Hong G.
Cell Res., 4,127-133 (1994). [IF: 9.417]
PDF
2010:
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
Xie W, Feng Q, Yu H, Huang X, Zhao Q, Xing Y, Yu S, Han B, Zhang Q.
Proc Natl Acad Sci U S A 2010; 107: 10578-83
PMID: 20498060
Genomic structure and evolution of the Pi2/9 locus in wild rice species.
Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL.
Theor Appl Genet. 2010; 121: 295-309.
PMID: 20229250
2009:
Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice.
Du, B., Zhang, W.L., Liu, B.F., Hu, J., Wei, Z., Shi, Z.Y., He, R.F., Zhu, L.L., Chen, R.Z., Han, B. & He, G.C.
Proc Natl Acad Sci U S A 2009; 106: 22163-68
PMID:20018701
2008:
Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication.
Yu Y, Tang T, Qian Q, Wang Y, Yan M, Zeng D, Han B, Wu CI, Shi S, Li J.
Plant Cell 2008; 20: 2946-59.
PMID: 19033526
Rice 2020: a call for an international coordinated effort in rice functional genomics.
Zhang Q, Li J, Xue Y, Han B, Deng XW.
Mol Plant. 2008; 1: 715-9.
PMID: 19825575
Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice.
Fang J, Chai C, Qian Q, Li C, Tang J, Sun L, Huang Z, Guo X, Sun C, Liu M, Zhang Y, Lu Q, Wang Y, Lu C, Han B, Chen F, Cheng Z, Chu C.
Plant J. 2008; 54: 177-89.
PMID: 18208525
The Rice Annotation Project Database (RAP-DB): 2008 update.
Rice Annotation Project, Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, Kanno M, Kawahara Y, Kawashima H, Kubooka H, Matsuya A, Nakaoka H, Saichi N, Sanbonmatsu R, Sato Y, Shinso Y, Suzuki M, Takeda J, Tanino M, Todokoro F, Yamaguchi K, Yamamoto N, Yamasaki C, Imanishi T, Okido T, Tada M, Ikeo K, Tateno Y, Gojobori T, Lin YC, Wei FJ, Hsing YI, Zhao Q, Han B, Kramer MR, McCombie RW, Lonsdale D, O'Donovan CC, Whitfield EJ, Apweiler R, Koyanagi KO, Khurana JP, Raghuvanshi S, Singh NK, Tyagi AK, Haberer G, Fujisawa M, Hosokawa S, Ito Y, Ikawa H, Shibata M, Yamamoto M, Bruskiewich RM, Hoen DR, Bureau TE, Namiki N, Ohyanagi H, Sakai Y, Nobushima S, Sakata K, Barrero RA, Sato Y, Souvorov A, Smith-White B, Tatusova T, An S, An G, OOta S, Fuks G, Fuks G, Messing J, Christie KR, Lieberherr D, Kim H, Zuccolo A, Wing RA, Nobuta K, Green PJ, Lu C, Meyers BC, Chaparro C, Piegu B, Panaud O, Echeverria M.
Nucleic Acids Res. 2008 Jan;36(Database issue):D1028-33. Epub 2007 Dec 17.
PMID: 18089549
2007:
Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library.
Zhang J, Guo D, Chang Y, You C, Li X, Dai X, Weng Q, Zhang J, Chen G, Li X, Liu H, Han B, Zhang Q, Wu C.
Plant J. 2007; 49: 947-59.
PMID: 17253985
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
Rice Annotation Project, Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, Habara T, Haberer G, Han B, Harada E, Hiraki AT, Hirochika H, Hoen D, Hokari H, Hosokawa S, Hsing YI, Ikawa H, Ikeo K, Imanishi T, Ito Y, Jaiswal P, Kanno M, Kawahara Y, Kawamura T, Kawashima H, Khurana JP, Kikuchi S, Komatsu S, Koyanagi KO, Kubooka H, Lieberherr D, Lin YC, Lonsdale D, Matsumoto T, Matsuya A, McCombie WR, Messing J, Miyao A, Mulder N, Nagamura Y, Nam J, Namiki N, Numa H, Nurimoto S, O'Donovan C, Ohyanagi H, Okido T, Oota S, Osato N, Palmer LE, Quetier F, Raghuvanshi S, Saichi N, Sakai H, Sakai Y, Sakata K, Sakurai T, Sato F, Sato Y, Schoof H, Seki M, Shibata M, Shimizu Y, Shinozaki K, Shinso Y, Singh NK, Smith-White B, Takeda J, Tanino M, Tatusova T, Thongjuea S, Todokoro F, Tsugane M, Tyagi AK, Vanavichit A, Wang A, Wing RA, Yamaguchi K, Yamamoto M, Yamamoto N, Yu Y, Zhang H, Zhao Q, Higo K, Burr B, Gojobori T, Sasaki T.
Genome Res. 2007; 17: 175-83.
PMID: 17210932
2006:
Diversity of centromeric repeats in two closely related wild rice species, Oryza officinalis and Oryza rhizomatis.
Bao W, Zhang W, Yang Q, Zhang Y, Han B, Gu M, Xue Y, Cheng Z.
Mol Genet Genomics. 2006; 275: 421-30.
PMID: 16463049
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein.
Fan C, Xing Y, Mao H, Lu T, Han B, Xu C, Li X, Zhang Q.
Theor Appl Genet. 2006; 112: 1164-71.
PMID: 16453132
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray.
Lian X, Wang S, Zhang J, Feng Q, Zhang L, Fan D, Li X, Yuan D, Han B, Zhang Q.
Plant Mol Biol. 2006; 60: 617-31.
PMID: 16649102
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.
Qu S, Liu G, Zhou B, Bellizzi M, Zeng L, Dai L, Han B, Wang GL.
Genetics. 2006; 172: 1901-14.
PMID: 16387888
Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development.
Stupar RM, Beaubien KA, Jin W, Song J, Lee MK, Wu C, Zhang HB, Han B, Jiang J.
Genetics. 2006; 172: 1263-75.
PMID: 16322504
2005:
Isolation and annotation of 10828 putative full length cDNAs from indica rice.
Xie K, Zhang J, Xiang Y, Feng Q, Han B, Chu Z, Wang S, Zhang Q, Xiong L.
Sci China C Life Sci. 2005; 48: 445-51.
PMID: 16315595
Microarray analysis reveals similarities and variations in genetic programs controlling pollination/fertilization and stress responses in rice (Oryza sativa L.).
Lan L, Li M, Lai Y, Xu W, Kong Z, Ying K, Han B, Xue Y.
Plant Mol Biol. 2005; 59: 151-64.
PMID: 16217609
A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.
Stolc V, Li L, Wang X, Li X, Su N, Tongprasit W, Han B, Xue Y, Li J, Snyder M, Gerstein M, Wang J, Deng XW.
Plant Mol Biol. 2005; 59: 137-49.
PMID: 16217608
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.
Plant Mol Biol. 2005; 59: 53-62.
PMID: 16217601
Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63.
Zhang J, Feng Q, Jin C, Qiu D, Zhang L, Xie K, Yuan D, Han B, Zhang Q, Wang S.
Plant J. 2005; 42: 772-80.
PMID: 15918889
The map-based sequence of the rice genome.
International Rice Genome Sequencing Project.
Nature. 2005; 436: 793-800.
PMID: 16100779
Mole, cular cytogenetic characterization of the Antirrhinum majus genome.
Zhang D, Yang Q, Bao W, Zhang Y, Han B, Xue Y, Cheng Z.
Genetics. 2005; 169: 325-35.
PMID: 15371361
2004:
Monitoring of gene expression profiles and isolation of candidate genes involved in pollination and fertilization in rice ( Oryza sativa L.) with a 10K cDNA microarray.
Lan L, Chen W, Lai Y, Suo J, Kong Z, Li C, Lu Y, Zhang Y, Zhao X, Zhang X, Zhang Y, Han B, Cheng J, Xue Y.
Plant Mol Biol. 2004; 54: 471-87.
PMID: 15316284
2003:
BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants.
Li Y, Qian Q, Zhou Y, Yan M, Sun L, Zhang M, Fu Z, Wang Y, Han B, Pang X, Chen M, Li J.
Plant Cell. 2003; 15: 2020-31.
PMID: 12953108
Control , of tillering in rice.
Li X, Qian Q, Fu Z, Wang Y, Xiong G, Zeng D, Wang X, Liu X, Teng S, Hiroshi F, Yuan M, Luo D, Han B, Li J.
Nature. 2003; 422: 618-21.
PMID:, 12687001
2002:
 
An F-box gene linked to the self-incompatibility (S, ) locus of Antirrhinum is expressed specifically in pollen and tapetum.
Lai Z, Ma W, Han B, Liang L, Zhang Y, Hong G, Xue Y.
Plant Mol Biol. 2002; 50: 29-42. [IF: 8.151]
PMID: 12139007
2010:
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
Xie W, Feng Q, Yu H, Huang X, Zhao Q, Xing Y, Yu S, Han B, Zhang Q.
Proc Natl Acad Sci U S A 2010; 107: 10578-83
PMID: 20498060
Genomic structure and evolution of the Pi2/9 locus in wild rice species.
Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL.
Theor Appl Genet. 2010; 121: 295-309.
PMID: 20229250
2009:
Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice.
Du, B., Zhang, W.L., Liu, B.F., Hu, J., Wei, Z., Shi, Z.Y., He, R.F., Zhu, L.L., Chen, R.Z., Han, B. & He, G.C.
Proc Natl Acad Sci U S A 2009; 106: 22163-68
PMID:20018701
2008:
Independent losses of function in a polyphenol oxidase in rice: differentiation in grain discoloration between subspecies and the role of positive selection under domestication.
Yu Y, Tang T, Qian Q, Wang Y, Yan M, Zeng D, Han B, Wu CI, Shi S, Li J.
Plant Cell 2008; 20: 2946-59.
PMID: 19033526
Rice 2020: a call for an international coordinated effort in rice functional genomics.
Zhang Q, Li J, Xue Y, Han B, Deng XW.
Mol Plant. 2008; 1: 715-9.
PMID: 19825575
Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice.
Fang J, Chai C, Qian Q, Li C, Tang J, Sun L, Huang Z, Guo X, Sun C, Liu M, Zhang Y, Lu Q, Wang Y, Lu C, Han B, Chen F, Cheng Z, Chu C.
Plant J. 2008; 54: 177-89.
PMID: 18208525
The Rice Annotation Project Database (RAP-DB): 2008 update.
Rice Annotation Project, Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y, Numa H, Sakai H, Wu J, Itoh T, Sasaki T, Aono R, Fujii Y, Habara T, Harada E, Kanno M, Kawahara Y, Kawashima H, Kubooka H, Matsuya A, Nakaoka H, Saichi N, Sanbonmatsu R, Sato Y, Shinso Y, Suzuki M, Takeda J, Tanino M, Todokoro F, Yamaguchi K, Yamamoto N, Yamasaki C, Imanishi T, Okido T, Tada M, Ikeo K, Tateno Y, Gojobori T, Lin YC, Wei FJ, Hsing YI, Zhao Q, Han B, Kramer MR, McCombie RW, Lonsdale D, O'Donovan CC, Whitfield EJ, Apweiler R, Koyanagi KO, Khurana JP, Raghuvanshi S, Singh NK, Tyagi AK, Haberer G, Fujisawa M, Hosokawa S, Ito Y, Ikawa H, Shibata M, Yamamoto M, Bruskiewich RM, Hoen DR, Bureau TE, Namiki N, Ohyanagi H, Sakai Y, Nobushima S, Sakata K, Barrero RA, Sato Y, Souvorov A, Smith-White B, Tatusova T, An S, An G, OOta S, Fuks G, Fuks G, Messing J, Christie KR, Lieberherr D, Kim H, Zuccolo A, Wing RA, Nobuta K, Green PJ, Lu C, Meyers BC, Chaparro C, Piegu B, Panaud O, Echeverria M.
Nucleic Acids Res. 2008 Jan;36(Database issue):D1028-33. Epub 2007 Dec 17.
PMID: 18089549
2007:
Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library.
Zhang J, Guo D, Chang Y, You C, Li X, Dai X, Weng Q, Zhang J, Chen G, Li X, Liu H, Han B, Zhang Q, Wu C.
Plant J. 2007; 49: 947-59.
PMID: 17253985
Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
Rice Annotation Project, Itoh T, Tanaka T, Barrero RA, Yamasaki C, Fujii Y, Hilton PB, Antonio BA, Aono H, Apweiler R, Bruskiewich R, Bureau T, Burr F, Costa de Oliveira A, Fuks G, Habara T, Haberer G, Han B, Harada E, Hiraki AT, Hirochika H, Hoen D, Hokari H, Hosokawa S, Hsing YI, Ikawa H, Ikeo K, Imanishi T, Ito Y, Jaiswal P, Kanno M, Kawahara Y, Kawamura T, Kawashima H, Khurana JP, Kikuchi S, Komatsu S, Koyanagi KO, Kubooka H, Lieberherr D, Lin YC, Lonsdale D, Matsumoto T, Matsuya A, McCombie WR, Messing J, Miyao A, Mulder N, Nagamura Y, Nam J, Namiki N, Numa H, Nurimoto S, O'Donovan C, Ohyanagi H, Okido T, Oota S, Osato N, Palmer LE, Quetier F, Raghuvanshi S, Saichi N, Sakai H, Sakai Y, Sakata K, Sakurai T, Sato F, Sato Y, Schoof H, Seki M, Shibata M, Shimizu Y, Shinozaki K, Shinso Y, Singh NK, Smith-White B, Takeda J, Tanino M, Tatusova T, Thongjuea S, Todokoro F, Tsugane M, Tyagi AK, Vanavichit A, Wang A, Wing RA, Yamaguchi K, Yamamoto M, Yamamoto N, Yu Y, Zhang H, Zhao Q, Higo K, Burr B, Gojobori T, Sasaki T.
Genome Res. 2007; 17: 175-83.
PMID: 17210932
2006:
Diversity of centromeric repeats in two closely related wild rice species, Oryza officinalis and Oryza rhizomatis.
Bao W, Zhang W, Yang Q, Zhang Y, Han B, Gu M, Xue Y, Cheng Z.
Mol Genet Genomics. 2006; 275: 421-30.
PMID: 16463049
GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein.
Fan C, Xing Y, Mao H, Lu T, Han B, Xu C, Li X, Zhang Q.
Theor Appl Genet. 2006; 112: 1164-71.
PMID: 16453132
Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray.
Lian X, Wang S, Zhang J, Feng Q, Zhang L, Fan D, Li X, Yuan D, Han B, Zhang Q.
Plant Mol Biol. 2006; 60: 617-31.
PMID: 16649102
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.
Qu S, Liu G, Zhou B, Bellizzi M, Zeng L, Dai L, Han B, Wang GL.
Genetics. 2006; 172: 1901-14.
PMID: 16387888
Structural diversity and differential transcription of the patatin multicopy gene family during potato tuber development.
Stupar RM, Beaubien KA, Jin W, Song J, Lee MK, Wu C, Zhang HB, Han B, Jiang J.
Genetics. 2006; 172: 1263-75.
PMID: 16322504
2005:
Isolation and annotation of 10828 putative full length cDNAs from indica rice.
Xie K, Zhang J, Xiang Y, Feng Q, Han B, Chu Z, Wang S, Zhang Q, Xiong L.
Sci China C Life Sci. 2005; 48: 445-51.
PMID: 16315595
Microarray analysis reveals similarities and variations in genetic programs controlling pollination/fertilization and stress responses in rice (Oryza sativa L.).
Lan L, Li M, Lai Y, Xu W, Kong Z, Ying K, Han B, Xue Y.
Plant Mol Biol. 2005; 59: 151-64.
PMID: 16217609
A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray.
Stolc V, Li L, Wang X, Li X, Su N, Tongprasit W, Han B, Xue Y, Li J, Snyder M, Gerstein M, Wang J, Deng XW.
Plant Mol Biol. 2005; 59: 137-49.
PMID: 16217608
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.
Plant Mol Biol. 2005; 59: 53-62.
PMID: 16217601
Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63.
Zhang J, Feng Q, Jin C, Qiu D, Zhang L, Xie K, Yuan D, Han B, Zhang Q, Wang S.
Plant J. 2005; 42: 772-80.
PMID: 15918889
The map-based sequence of the rice genome.
International Rice Genome Sequencing Project.
Nature. 2005; 436: 793-800.
PMID: 16100779
Molecular cytogenetic characterization of the Antirrhinum majus genome.
Zhang D, Yang Q, Bao W, Zhang Y, Han B, Xue Y, Cheng Z.
Genetics. 2005; 169: 325-35.
PMID: 15371361
2004:
Monitoring of gene expression profiles and isolation of candidate genes involved in pollination and fertilization in rice ( Oryza sativa L.) with a 10K cDNA microarray.
Lan L, Chen W, Lai Y, Suo J, Kong Z, Li C, Lu Y, Zhang Y, Zhao X, Zhang X, Zhang Y, Han B, Cheng J, Xue Y.
Plant Mol Biol. 2004; 54: 471-87.
PMID: 15316284
2003:
BRITTLE CULM1, which encodes a COBRA-like protein, affects the mechanical properties of rice plants.
Li Y, Qian Q, Zhou Y, Yan M, Sun L, Zhang M, Fu Z, Wang Y, Han B, Pang X, Chen M, Li J.
Plant Cell. 2003; 15: 2020-31.
PMID: 12953108
Control of tillering in rice.
Li X, Qian Q, Fu Z, Wang Y, Xiong G, Zeng D, Wang X, Liu X, Teng S, Hiroshi F, Yuan M, Luo D, Han B, Li J.
Nature. 2003; 422: 618-21.
PMID: 12687001
2002:
An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum.
Lai Z, Ma W, Han B, Liang L, Zhang Y, Hong G, Xue Y.
Plant Mol Biol. 2002; 50: 29-42.
PMID: 12139007
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