• Lu, T.T., Lu, G.J., Fan, D.L., Zhu, C.R., Li, W., Zhao, Q., Feng, Q., Zhao, Y., Guo, Y.L., Li, W.J., Huang, X.H. & Han, B*. Function annotation of rice transcriptome at single nucleotide resolution by RNA-seq. Genome Res., 20, 1238-1249 (2010).

• Peng, Z.H., Lu, T.T., Li, L.B., Liu, X.H., Gao, Z.M., Hu, T., Yang, X.W., Feng, Q., Guan, J.P., Weng, Q.J., Fan, D.L., Zhu, C.R., Lu, Y., Han, B*. & Jiang, Z.H*. Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences. BMC Plant Biol., 10, 116 (2010).

• Xie, W.B., Feng, Q., Yu, H.H., Huang, X.H., Zhao, Q., Xing, Y.Z., Yu, S.B., Han, B. & Zhang, Q.F*. Parent-independent genotyping for constructing an ultrahigh-density map based on population sequencing. Proc Natl Acad Sci USA 107, 10578-10583 (2010).

2009

• Feng, Q., Huang, T., Zhao, Q., Zhu, J.J., Lin, Z.X., Han, B*. Analysis of collinear regions of Oryza AA and CC genomes.  J. Genet. Genomics., 36, 667-677 (2009).

• Gao, Z.Y., Qian, Q., Liu, X.H., Yan, M.X., Feng, Q., Dong, G.J., Liu, J., Han, B*. Dwarf 88, a novel putative esterase gene affecting architecture of rice plant. Plant Mol Biol., 71, 265-276 (2009).

• Huang, X.H., Feng, Q., Qian, Q., Zhao, Q., Wang, L., Wang, A.H., Guan, J.P., Fan, D.L., Weng, Q.J., Huang, T., Dong, G.J., Sang, T. & Han, B. High-throughput genotyping by whole-genome resequencing. Genome Res., 19, 1068-1076 (2009).

• Li, W., Wang, B.H., Wu, J., Lu, G.D., Hu, Y.J., Zhang, X., Zhang, Z.G., Zhao, Q., Feng, Q., Zhang, H.Y., Wang, Z.Y., Wang, G.L., Han, B., Wang, Z.H. & Zhou, B. The Magnaporthe oryzae Avirulence Gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t. Mol Plant Microbe Interact., 22, 411-420 (2009).

• Du, B., Zhang, W.L., Liu, B.F., Hu, J., Wei, Z., Shi, Z.Y., He, R.F., Zhu, L.L., Chen, R.Z., Han, B. & He, G.C. Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice. Proc Natl Acad Sci U S A. 106, 22163-22168 (2009).

• Liu, X.L. & Han, B. Evolutionary conservation of neighbouring gene pairs in plants. Gene 437, 71-79 (2009).

• Hu, W.H., Hu, G.C. & Han, B. Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice. Plant Sci., 176, 583-590 (2009).

• Zheng, X.N., Chen, B., Lu, G.J. & Han, B. Overexpression of a NAC transcription factor enhances rice drought and salt tolerance. Biochem Bioph Res Co. 379, 985-989 (2009).

• Gao, C.X. & Han, B. Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa). Gene 431, 86-94 (2009).

• Lu, G.J., Gao, C.X., Zheng, X.N. & Han, B. Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta 229, 605-615 (2009).

2008

• Han, B. & Zhang, Q.F. Rice genome research: current status and future perspectives. The Plant Genome 1, 71-76 (2008).

• Lu, T.T., Huang, X.H., Zhu, C.R., Huang, T., Zhao, Q., Xie, K.B., Xiong, L.Z., Zhang, Q.F. & Han, B. RICD: A rice indica cDNA database resource for rice functional genomics. BMC Plant Biol., 8, 118 (2008).

• Zhang, Q.F., Li, J.Y., Xue, Y.B., Han, B, & Deng, X.W. Rice 2020: A call for an international coordinated effort in rice functional genomics. Molecular Plant 1, 715-719 (2008).

• Lu, T.T., Yu, S.L., Fan, D.L., Mu, J., Shangguan, Y.Y., Wang, Z.X., Minobe, Y., Lin, Z.X.& Han, B. Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943. DNA Res., 15, 285-295 (2008).

• Huang, X.H., Lu, G.J., Zhao, Q., Liu, X.H. & Han, B. Genome-wide analysis of transposon insertion polymorphisms reveals intra-specific variation in cultivated rice. Plant Physiol., 148, 25-40 (2008).

• Yu, Y., Tang, T., Qian, Q., Wang, Y., Yan, M., Zeng, D., Han, B., Wu, CI., Shi S. & Li, J. Independent Losses of Function in a Polyphenol Oxidase in Rice: Differentiation in Grain Discoloration between Subspecies and the Role of Positive Selection under Domestication. Plant Cell 20, 2946-2959 (2008).

• Fang, J., Chai, C., Qian, Q., Li, C., Tang, J., Sun, L., Huang, Z., Guo, X., Sun, C., Liu, M., Zhang, Y., Lu, Q., Wang, Y., Lu, C., Han, B., Chen, F., Cheng, Z. & Chu, C. Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice. Plant J., 54, 177-189 (2008).

• Rice Annotation Project. The rice annotation project database (RAP-DB): 2008 update. Nucleic Acids Res., 36, D1028-D1033 (2008).

2007

• Liu, X.H., Lu, T.T., Yu, S.L., Li, Y., Huang, Y.C., Huang, T., Zhang, L., Zhu, J.J., Zhao, Q., Fan, D.L., Mu, J., Shangguan, Y.Y., Feng, Q., Guan, J.P., Ying, K., Zhang, Y., Lin, Z.X., Sun, Z.X., Qian, Q., Lu, Y.P. & Han, B. A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies. Plant Mol Biol., 65, 403-415 (2007).

• Han, B., Xue, Y.B., Li, J.Y., Deng, X.W. & Zhang, Q.F. Rice functional genomics research in China. Phi. Trans. R. Soc. B 362, 1009-1021 (2007).

• The Rice Annotation Project. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Genome Res., 17, 175-183 (2007).

• Wang, D.K., Pei, K.M., Fu, Y.P., Sun, Z.X., Li, S.J., Liu, H.Q., Tang, K., Han, B. & Tao, Y.Z. Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa). Gene 394, 13–24 (2007).

• Hu, H., Mu, J., Zhang, H.J., Tao, Y.Z. & Han, B. Differentiation of a Miniature Inverted Transposable Element (MITE) System in Asian Rice Cultivars and Its Inference for a Diphyletic Origin of Two Subspecies of Asian Cultivated Rice. J Integ Plant Biol., 48, 260-267 (2006).

• Stupar, R.M., Beaubien, K.A., Jin, W.W., Song, J.Q., Lee, M.K., Wu, C.C., Zhang, H.B., Han, B. & Jiang, J.M. Structural Diversity and Differential Transcription of the Patatin Multicopy Gene Family During Potato Tuber Development. Genetics 172, 1263-1275 (2006).

• Bao, W.D., Zhang, W.L., Yang, Q.Y., Zhang, Y., Han, B., Gu, M.H., Xue, Y.B., & Cheng, Z.K. Diversity of centromeric repeats in two closely related wild rice species,Oryza officinalisand Oryzarhizomatis. Mol. Genet. Genomics 275, 421-430 (2006).

• Lian, X.M., Wang, S.P., Zhang, J.W., Feng, Q., Zhang, L.D., Fan, D.L., Li, X.H., Yuan, D.J., Han, B. & Zhang, Q.F. Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol., 60, 617-631 (2006).

• Fan, C.C., Xing, Y.Z., Mao, H.L., Lu, T.T., Han, B., Xu, C.G., Li, X.H. & Zhang, Q.F. GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet., 112, 1164-71 (2006).

• Lu, Y., Gao, C.X. & Han, B. Sequence analysis of mRNA polyadenylation signals of rice genes. (Peer Review in English) Chinese Sci Bull., 51, 1069-1077 (2006).

• Zhang, Y.J., Wu, Y.R., Liu, Y.L. & Han, B. Computational Identification of 69 Retroposons in Arabidopsis . Plant Physiol., 138, 935-948 (2005).

• International Rice Genome Sequencing Project. The map-based sequence of the rice genome. Nature 436, 793-800 (2005).

• Jiao, Y.L., Jia, P.X., Wang, X.F., Su, N., Yu, S.L., Zhang, D.F., Ma, L.G., Feng, Q., Jin, Z.Q., Li, L., Xue, Y.B., Cheng, Z.K., Zhao, H.Y., Han, B. & Deng, X.W. A Tiling Microarray Expression Analysis of Rice Chromosome 4 Suggests a Chromosome-Level Regulation of Transcription. Plant Cell 17,1641-57 (2005).

• Lu, Y., Wu, Y.R. & Han, B. Anaerobic Induction of Isocitrate Lyase and Malate Synthase in Submerged Rice Plants Indicates the Important Metabolic Role of the Glyoxylate Cycle. Acta Biochimica et Biophysica Sinica 37, 406-414 (2005).

• Qu, S.H., Liu, G.F., Zhou, B., Bellizzi, M., Zeng, L.R., Dai, L.Y., Han, B. & Wang, G.L. The Broad-Spectrum Blast Resistance Gene Pi9 Encodes a Nucleotide-Binding Site-Leucine-Rich Repeat Protein and Is a Member of a Multigene Family in Rice. Genetics 172, 1901-1914 (2005).

• Lan, L.F., Li, M.N., Lai, Y., Xu, W.Y., Kong, Z.S., Ying, K., Han, B. & Xue, Y.B. Microarray analysis reveals similarities and variations in genetic programs controlling pollination/fertilization and stress responses in rice (Oryza sativa L.). Plant Mol Biol.,59, 151-164 (2005).

• Wing, R.A., Ammiraju, J.S.S., Luo, M.Z., Kim, H.R., Yu, Y.S. , Kudrna, D., Goicoechea, J.L., Wang, W.M., Nelson, W., Rao, K.R., Brar, D.S., Mackill, D.J., Han, B., Soderlund, C., Stein, L., SanMiguel, P. & Jackson, S. The Oryza Map Alignment Project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol., 59, 53-62 (2005).

• Stolc, V., Li L., Wang, X.F., Li, X.Y., Su, N., Tongprasit, W., Han, B., Xue, Y.B., Li, J.Y., Snyder, M., Gerstein, M., Wang, J. & Deng, X.W. A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray. Plant Mol Biol., 59, 137-149(2005).

• Zhang, D.F., Yang, Q.Y., Bao, W.D., Zhang, Y., Han, B., Xue, Y.B. & Cheng, Z.K. Molecular Cytogenetic Characterization of the Antirrhinum majus Genome. Genetics 169, 325-335 (2005).

• Xie, K.B., Zhang, J.W., Xiang, Y., Feng Q., Han, B., Chu, Z.H., Wang, S.P., Zhang, Q.F. & Xiong, L.Z. Isolation and annotation of 10828 putative full length cDNAs from indica rice. Science in China Ser. C Life Sciences 48, 445-451(2005).

• Lian, X.M., Wang, S.P., Zhang, J.W., Feng, Q., Zhang, L.D., Fan, D.L., Li, X.H., Yuan, D.J., Han, B. & Zhang, Q.F. Expression profiles of 10,422 genes at early stage of low nitrogen stress in rice assayed using a cDNA microarray. Plant Mol Biol., 60, 617–631 (2006).

• Zhang, J.W., Feng, Q., Jin, C.Q., Qiu, D.Y., Zhang, L.D., Xie, K.B., Yuan, D.J., Han, B., Zhang, Q.F. & Wang, S.P. Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63 . Plant J., 42, 772-80 (2005).

• Zhang, D.F., Yang, Q.Y., Bao, W.D., Zhang, Y., Han, B., Xue, Y.B. & Cheng, Z.K. Molecular cytogenectics characterization of the Antirrhinum majus genome. Genetics 169, 325-335 (2005).

2004

• Zhang, Y., Huang, Y.C., Zhang, L., Li, Y., Lu, T.T., Lu, Y.Q., Feng, Q., Zhao, Q., Cheng, Z.K., Xue Y.B., Wing, R.A. & Han, B. Structural features of the rice chromosome 4 centromere. Nucleic Acids Res., 32, 2023-2030 (2004).

• Wang, R., Hong, G.F. & Han, B. Transcript abundance of rml1, encoding a putative GT1-like factor in rice, is up-regulated by Magnaporthe grisea and down-regulated by light. Gene 324,105–115 (2004).

• Li, C., Zhang, Yu., Ying, K., Liang, X.L. & Han, B. Sequence variations of simple sequence repeats on chromosome-4 in two subspecies of the Asian cultivated rice. Theor Appl Genet., 108, 392–400 (2004).

• Li, T. & Han, B. Dampable Waves along Nucleic Acid Sequences Mediating Nucleotides' Interactions. DNA Sequence 15, 135-140(2004).

• Hu, X., Hu, H., Hong, G.F. & Han, B. Identification and analysis of a group of highly conserved trs-like genes in rice. Yi Chuan Xue Bao 31,822-829 (2004).

• Hu, X., Hu, H., Hong, G.F. & Han, B.The structural, transcriptional and homology analysis of two frr genes in rice. Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao 30, 105-114 (2004).

• Liu, X.H., Wang, H.W., Li, Y.M., Tang, Y.S., Liu, Y.L., Hua, X., Jia, P.X., Ying, K., Feng, Q., Guan, J.P., Jin, C.Q., Zhang, L., Lou, L.R., Zhou, Z. & Han, B. Preparation of single rice chromosome for construction of a DNA library using a laser microbeam trap J Biotechnol., 109, 217–226 (2004).

• Lan, L.F., Chen, W., Lai, Y., Suo, J.F., Kong, Z.S., Li, C., Lu, Y., Zhang, Y.J., Zhao, X.Y., Zhang X.S., Zhang, Y.S., Han, B., Cheng, J. & Xue, Y.B. Monitoring of gene expression profiles and isolation of candidate genes involved in pollination and fertilization in rice (Oryza sativa L.) with a 10K cDNA microarray. Plant Mol Biol., 54, 471–487 (2004).

2003

• Li, X.Y., Qian, Q,, Fu, Z.M., Wang, Y.H., Xiong, G.S., Zeng, D.L., Wang, X.Q., Liu, X.F., Teng, S., Hiroshi, F., Yuan, M., Luo, D., Han, B. & Li, J.Y. Control of tillering in rice. Nature 422, 618-621 (2003).

• Li, Y.H., Qian, Q., Zhou, Y.H., Yan, M.X., Sun, L., Zhang, M., Fu, Z.M, Wang, Y.H, Han, B., Pang, X.M., Chen, M.S. & Li, J.Y. BRITTLE CULM1, which encodes a COBRA-like protein. affects the mechanical properties of rice plants. Plant Cell 15, 2020-2031 (2003).

• Han, B. & Xue, Y.B. Genome-wide intraspecific DNA-sequence variations in rice. Curr Opin Plant Biol., 6, 134-138 (2003).

2002

• Lai, Z., Ma, W., Han, B., Liang, L.Z., Zhang, Y.S., Hong, G.F. & Xue, Y.B. An F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is expressed specifically in pollen and tapetum. Plant Mol Biol., 50, 29-42 (2002).

• Feng, Q., Zhang, Y.J., Hao, P., Wang, S.Y., Fu, G., Huang, Y.C., Li, Y., Zhu, J.J., Liu, Y.L., Hu, X.,Jia, P.X., Zhang, Y., Zhao, Q., Ying, K., Yu, S.L., Tang, Y.S., Weng, Q.J., Zhang, L., Lu, Y., Mu, J., Lu, Y.Q., Zhang, L., Yu, Z., Fan, D.L., Liu, X.H., Lu, T.T., Li, C., Wu, Y.R., Sun, T.G., Lei, H.Y., Li, T., Hu, H., Guan, J.P., Wu, M., Zhang, R.Q., Zhou, B., Chen, Z.H., Chen, L., Jin, Z.Q., Wang, R., Yin, H.F., Cai, Z., Ren, S.X., Lv, G., Gu, W.Y., Zhu, G.F., Tu, Y.F., Jia, J., Zhang, Y., Chen, J., Kang, H., Chen, X.Y., Shao, C.Y., Sun, Y., Hu, Q.P., Zhang, X.L., Zhang, W., Wang, L.J., Ding, C.W., Sheng, H.H., Gu, G.L., Chen, S.T., Ni, L., Zhu, F.H., Chen, W., Lan, L.F., Lai, Y., Cheng, Z.K., Gu, M.H., Jiang, J.M., Li, J.Y., Hong, G.F., Xue, Y.B. & Han, B. Sequence and analysis of rice chromosome 4. Nature 420, 336-40 (2002).

• Zhao, Q., Zhang, Y., Cheng, Z.K., Chen, M.S., Wang, S.Y., Feng, Q., Huang, Y.C., Li, Y., Tang, Y.S., Zhou, B., Chen, Z.H., Yu, S.L., Zhu, J.J., Hu, X., Mu, J., Ying, K., Hao, P., Zhang, L., Lu, Y.Q., Zhang, L., Liu, Y.L., Yu, Z., Fan, D.L., Weng, Q.J., Chen, L., Lu, T.T., Liu, X.H., Jia, P.X., Sun, T.G., Wu, Y.R., Zhang, Y.J., Lu, Y., Li, C., Wang, R., Lei, H.Y., Li, T., Hu, H., Wu, M., Zhang, R.Q., Guan, J.P., Zhu, J., Fu, G., Gu, M.H., Hong, G.F., Xue, Y.B., Wing, R., J, J.M. & Han, B. A fine physical map of the rice chromosome 4. Genome Res., 12, 817-23 (2002).

• Lei, H.Y., Zhou, B., Hong, G.F. & Han, B. Characterization of a S-locus-related receptor-like kinase cluster on rice chromosome 4 . Acta Botanica Sinica 44, 1346-1350 (2002).

• Lei, H.Y., Zhou, B., Zhang, Y., Hong, G.F. & Han, B. Structural Analysis of a Gene Cluster Encoding DFR-like Proteins from Rice Chromosome 4. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 34, 685-689 (2002).

• Hu, H., Li, T., Mu, J., Han, B. & Hong, G.F. A high efficient approach used for BAC-contig extension of Oryza sativa with PCR screening the BAC clone pools. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 34, 358-364 (2002).

• Tang, Y.S., Li, Y., Zhu, J.J., Hu, X., Lin, Z.X., Han, B. & Hong, G.F. Colony PCR Apply to The Rice Genome Sequencing. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Jin Zhan 29, 316-318 (2001).

2001

• Chen, Z.H., Zhou, B., Han, B., Qian, Y.M. & Hong, G.F. Structural Analysis of a Gene Cluster Encoding Two Cationic and Three Anionic Peroxidases from Rice Chromosome 4. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 33, 163-172 (2001).

• Zhou, B., Chen, Z.H., Han, B. & Hong, G.F. Identification and Structural Analysis of a Class of Potentially Transposable Solo-LTR in Rice Genome. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 33, 158-162 (2001).

• Yu, S.L., Lei, H.Y., Chang, W., Soll, D. & Hong, G.F. Protein phosphatase 2A : Identification in Oryza sativa of the gene encoding the regulatory A subunit. Plant Mol Biol., 45, 107-112 (2001).

2000

• Zhang, X.L. & Hong, G.F. Preferential Location of MITEs in Rice Genome. Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 32, 223-228 (2000).

1997

• Hong, G., Qian, Y., Yu, S., Hu, X., Zhu, J., Tao, W., Li, W., Su, C., Zhao, H., Qiu, L., Yu, D., Liu, X., Wu, B., Zhang, X. & Zhao, W. A 120 kilobase resolution contig map of the rice genome. DNA Sequence 7, 319-35 (1997).

• Hong, G.F. A rapid and accurate strategy for rice contig map construction by combination of fingerprinting and hybridization. Plant Mol Biol., 35,129-33 (1997).

1994

• Tao, Q., Zhao, H., Qiu, L. & Hong, G. Construction of a full bacterial artificial chromosome(BAC) library of Oryza sativa genome. Cell Res., 4,127-133 (1994).